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Scientists, Parents Join Forces to Identify New Genetic Disease in Children

For Release: March 20, 2014

STANFORD, Calif. 鈥 Scientists and parents have worked together to identify a new genetic disease that causes neurologic, muscle, eye and liver problems in children. The discovery was unusually fast thanks to a combination of modern gene-sequencing techniques, social media and old-fashioned detective work.

One important clue was that affected children cry without making tears.

Wilsey Family - 麻豆果冻传媒 Children's Health

The new disease, called NGLY1 deficiency, is described in a paper published online March 20 in Genetics in Medicine, the journal of the . The paper describes eight children with mutations in the gene coding for N-glycanase 1, an enzyme that recycles defective products from a cellular assembly line. Children who lack this enzyme have varying degrees of movement disorders, including a characteristic combination of muscle contractions that causes abnormal tremulous movements. They also have developmental delays and liver problems. The gene defect is so rare that until recently, finding eight affected individuals would have taken several years; instead, the children were found in a matter of months.

鈥淭his represents a complete change in the way we鈥檙e going about clinical medicine,鈥 said Gregory Enns, MB, ChB, associate professor of genetics in pediatrics at the and co-lead author of the new paper. Gene-sequencing tools have sped the translation of findings between clinical and lab settings; in addition, scientists around the globe and lay people are contributing to the discovery process.

鈥淭his is happening so quickly because of the integration of the families with the researchers, and because so many people are coming at this from so many angles,鈥 said Enns, who is also a geneticist at Lucile Packard Children鈥檚 Hospital Stanford and Stanford Children鈥檚 Health. Other co-authors of the paper come from 12 research institutions across the United States, Canada, Germany and the United Kingdom.

Finally knowing

Grace Wilsey was among the first patients in the world to be identified with an N-glycanase 1 deficiency. NGLY1, an enzyme, helps break down incorrectly shaped proteins so their components can be reused. 鈥淭he relief of finally getting a diagnosis is just life-changing,鈥 said Kristen Wilsey, mother of Grace Wilsey, 4, who was the second American patient, and among the first few in the world, to be identified with NGLY1 deficiency. Grace鈥檚 diagnosis was a pivotal moment not just for her San Francisco Bay Area family but also for defining the new disease, since the comparison of multiple patients allowed researchers to confirm that the disease existed.

The enzyme that is missing in NGLY1-deficiency patients is normally found in cells throughout the body. N-glycanase 1 helps break down incorrectly shaped proteins so their components can be reused. The new research confirmed that children with a defective NGLY1 gene do not make the N-glycanase enzyme. The researchers also observed that the children鈥檚 liver biopsies contained an amorphous substance, which they suspected was an accumulation of protein that did not get recycled.

Before Grace鈥檚 diagnosis at age 3, Kristen Wilsey and her husband, Matt, searched across the country for answers to their daughter鈥檚 liver dysfunction, developmental delays and other neurologic problems. When her combination of symptoms did not fit any known disease, teams at Stanford and sequenced her genome. They came up with eight genes to investigate, including NGLY1, and began investigating the genes in order of the likelihood that they might explain Grace鈥檚 disease. NGLY1 was at the end of the list.

The first to solve the puzzle was Matthew Bainbridge, PhD, a postdoctoral associate in the Human Genome Sequencing Center at Baylor who shares lead authorship of the paper. Bainbridge read in the medical literature of another child, studied at , whose caregivers there suspected his unusual symptoms were tied to an NGLY1 gene defect. But without a second patient for comparison, they weren鈥檛 sure.

'I think I have it'

As part of his detective work, Bainbridge emailed Kristen Wilsey to ask if Grace produced tears when she cried. Wilsey replied that although Grace鈥檚 eyes were moist, she never really made tears. Bainbridge wrote back, 鈥淚 think I have it.鈥

鈥淢y heart jumped out of my chest,鈥 Wilsey said. The first patient identified with NGLY1 deficiency, it turned out, also did not make tears, and the same characteristic has since been observed in seven of the eight children with NGLY1 gene defects whom the researchers have identified.

Biochemical testing confirmed that Grace lacks the N-glycanase 1 enzyme. With that finding, the medical teams began comparing the early patients鈥 symptoms in detail. But modern communication added a twist: The father of the first patient had blogged about his son鈥檚 diagnostic odyssey. The Wilseys connected with them by email and began collaborating to help the researchers understand the new disease. Matt Wilsey and the father who wrote the blog, Matthew Might, have co-authored an editorial for Genetics in Medicine that will accompany the paper, describing how families鈥 engagement in social media can speed scientific discovery. The journal also has produced a podcast featuring the two fathers.

鈥淪ocial media helps parents coordinate and share ideas,鈥 said Matt Wilsey, noting that parents can also connect scientists at different institutions to one another or to resources the researchers have not considered tapping. Using blogs and other online forums also helps scientists avoid a pitfall of the scientific publication process, he added: 鈥淪cientists can share their failures, getting their negative results 鈥榦ut there鈥 so others don鈥檛 reinvent the wheel.鈥

Recently, the researchers, patients and families met for a scientific symposium to plan future studies of the disease. 鈥淪eeing all these kids, and observing that they had similar movements, affect 鈥 and even looked quite similar in some cases 鈥 solidified that this is real,鈥 Enns said. 鈥淚t was quite amazing.鈥

Just the beginning

But the symposium underscored how much remains to be done. 鈥淲e don鈥檛 know how NGLY1 deficiency is causing the neurological findings seen in the children we鈥檙e treating,鈥 Enns said. 鈥淥nce the gene defect is found, that鈥檚 when the work really begins.鈥

At present, teams from around the world are examining many models of the disease 鈥 including stem cells, mice, fruit flies and zebrafish 鈥 to figure out how the gene defect is linked to the children鈥檚 symptoms and to look for drug targets that could be developed into new therapies.

鈥淏efore we had a diagnosis, we always had the fear of the bottom dropping out,鈥 Matt Wilsey said. Without knowing exactly what was wrong, he and his wife constantly worried that Grace might suddenly deteriorate. 鈥淚n that situation, you鈥檙e always on the defensive; you can鈥檛 enjoy parenthood,鈥 he said.

鈥淲ith a diagnosis, we can start working on a cure or a way to alleviate some of Grace鈥檚 symptoms,鈥 Kristen Wilsey said. 鈥淚t鈥檚 hard to describe that feeling. When we got the news, we were so excited that neither of us could sleep.鈥

Vandana Shashi, MD, associate professor of pediatrics in the division of medical genetics at Duke University, also shares lead authorship of the paper. The paper鈥檚 senior author is David Goldstein, PhD, professor of genetics at Duke. Other Stanford co-authors of the paper were genetic counselors Julia Platt and Rachel Cox; Jonathan Bernstein, MD, PhD, assistant professor of pediatrics; Atul Butte, MD, PhD, associate professor of pediatrics and of genetics; postdoctoral scholars Sean Boyle, PhD, Rong Chen, PhD, Michael Clark, PhD, and Rajini Haraksingh, PhD; Tina Cowan, PhD, associate professor of pathology; and Michael Snyder, PhD, professor of genetics.

In addition to Stanford, Duke and Baylor, collaborators on the new paper came from Emory University School of Medicine in Atlanta; the University of British Columbia in Canada; Klinik f眉r Kinder und Jugendliche Epilepsiezentrum Kork in Germany; Nemours/Alfred I. duPont Hospital for Children in Orlando; Imperial College in London; Dalhousie University in Canada; Texas Children鈥檚 Hospital; Sanford-Burnham Medical Research Institute in La Jolla, Calif.; and the Howard Hughes Medical Institute at Baylor.

Support for the research was provided by private philanthropy and by a research project (FORGE Canada) that is funded by the government of Canada through Genome Canada, the Canadian Institutes of Health Research and the Ontario Genomics Institute. One of the paper鈥檚 co-authors also received funding from the Doris Duke Charitable Foundation.

Information about the Department of Pediatrics at the Stanford School of Medicine, which also supported this work, is available at .

Authors

Media contact:
Winter Johnson
(650) 498-7056
wijohnson@stanfordchildrens.org

Print Media Contact:
Erin Digitale
digitale@stanford.edu

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